
Chinese General Practice ›› 2025, Vol. 28 ›› Issue (30): 3796-3805.DOI: 10.12114/j.issn.1007-9572.2024.0676
Special Issue: 内分泌代谢性疾病最新文章合辑
• Original Research·Research Trends of Traditional Chinese Medicine • Previous Articles Next Articles
Received:2025-02-14
Revised:2025-05-26
Published:2025-10-20
Online:2025-08-18
Contact:
ZHANG Bo
通讯作者:
张博
作者简介:本文首次刊登于Precision Medication 2025年第2期(https://doi.org/10.1016/j.prmedi.2025.100028)
作者贡献:
张可兴提出研究思路,设计实验方案;张博负责网络药理学的整个实验方案的书写和论文的书写;吴琼负责利用TCMSP、GeneCards、OMIM、TTD软件进行网络药理学的具体数据分析和试验绘图;朱珊珊、王迪负责血清代谢组学中的血清样本收集和血清的处理和操作;张春男负责血清样本的收集及试验数据的处理分析。
基金资助:CLC Number:
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URL: https://www.chinagp.net/EN/10.12114/j.issn.1007-9572.2024.0676
| 名称 | 版本 | 网址 |
|---|---|---|
| TCMSP数据库[ | 2.3 | https://tcmspw.com/tcmsp.php |
| Uniprot数据库[ | https://www.uniprot.org | |
| GeneCards数据库[ | http://www.genecards.org/ | |
| OMIM数据库[ | https://omim.org | |
| TTD数据库[ | http://db.idrblab.net/ttd/ | |
| String平台[ | 11b | https://string-db.org |
| Metascape平台[ | https://metascape.org | |
| PDB数据库[ | https://www.rcsb.org | |
| Cytoscape[ | 3.8.0 | |
| AutoDockTools | 1.5.6 | |
| Pymol | ||
| RStudio | ||
| Discovery Studio | 4.5 |
Table 1 The database,platform and software used in the research
| 名称 | 版本 | 网址 |
|---|---|---|
| TCMSP数据库[ | 2.3 | https://tcmspw.com/tcmsp.php |
| Uniprot数据库[ | https://www.uniprot.org | |
| GeneCards数据库[ | http://www.genecards.org/ | |
| OMIM数据库[ | https://omim.org | |
| TTD数据库[ | http://db.idrblab.net/ttd/ | |
| String平台[ | 11b | https://string-db.org |
| Metascape平台[ | https://metascape.org | |
| PDB数据库[ | https://www.rcsb.org | |
| Cytoscape[ | 3.8.0 | |
| AutoDockTools | 1.5.6 | |
| Pymol | ||
| RStudio | ||
| Discovery Studio | 4.5 |
| 时间(min) | 流速(mL/min) | %A相(0.1%甲酸-乙腈) | %B相(0.1%甲酸-水) |
|---|---|---|---|
| Initial | 0.400 | 1.0 | 99.0 |
| 0.50 | 0.400 | 20.0 | 80.0 |
| 2.50 | 0.400 | 60.0 | 40.0 |
| 4.00 | 0.400 | 66.0 | 34.0 |
| 5.00 | 0.400 | 80.0 | 20.0 |
| 7.50 | 0.400 | 86.0 | 14.0 |
| 8.00 | 0.400 | 99.0 | 1.0 |
| 9.00 | 0.400 | 99.0 | 1.0 |
Table 2 Serum metabolomics elution gradient
| 时间(min) | 流速(mL/min) | %A相(0.1%甲酸-乙腈) | %B相(0.1%甲酸-水) |
|---|---|---|---|
| Initial | 0.400 | 1.0 | 99.0 |
| 0.50 | 0.400 | 20.0 | 80.0 |
| 2.50 | 0.400 | 60.0 | 40.0 |
| 4.00 | 0.400 | 66.0 | 34.0 |
| 5.00 | 0.400 | 80.0 | 20.0 |
| 7.50 | 0.400 | 86.0 | 14.0 |
| 8.00 | 0.400 | 99.0 | 1.0 |
| 9.00 | 0.400 | 99.0 | 1.0 |
| 代谢途径 | 原始P值 | 错误发现率 | 影响力 |
|---|---|---|---|
| 甘油磷脂代谢 | 0.013 454 | 0.643 01 | 0.244 36 |
| 嘧啶代谢 | 0.015 701 | 0.643 01 | 0.068 09 |
| 氮代谢 | 0.030 620 | 0.643 01 | 0 |
| D-谷氨酰胺和D-谷氨酸代谢 | 0.030 620 | 0.643 01 | 0.500 00 |
| 糖基磷脂酰肌醇(GPI)锚生物合成 | 0.070 168 | 0.745 10 | 0.003 99 |
| 精氨酸生物合成 | 0.070 168 | 0.745 10 | 0.116 75 |
| 丁酸代谢 | 0.075 011 | 0.745 10 | 0 |
| 组氨酸代谢 | 0.079 832 | 0.745 10 | 0 |
| 甘油酯代谢 | 0.079 832 | 0.745 10 | 0.012 46 |
| 泛酸和辅酶A(CoA)的生物合成 | 0.094 163 | 0.755 20 | 0.235 71 |
| 醚脂代谢 | 0.098 896 | 0.755 20 | 0.144 58 |
| 磷脂酰肌醇信号系统 | 0.135 990 | 0.808 66 | 0.001 52 |
| 谷胱甘肽代谢 | 0.135 990 | 0.808 66 | 0.019 66 |
| 丙氨酸、天冬氨酸和谷氨酸代谢 | 0.135 990 | 0.808 66 | 0.197 12 |
| 卟啉和叶绿素代谢 | 0.145 050 | 0.808 66 | 0 |
| 乙醛酸盐和二羧酸盐代谢 | 0.154 030 | 0.808 66 | 0 |
| 精氨酸和脯氨酸代谢 | 0.180 470 | 0.891 75 | 0.086 00 |
| 氨酰基转移核糖核酸生物合成 | 0.222 940 | 1.000 00 | 0 |
| 嘌呤代谢 | 0.290 730 | 1.000 00 | 0 |
Table 3 The participation of metabolites in metabolic pathways of patients with diabetic foot in the intervention of Simiao Yongan Decoction
| 代谢途径 | 原始P值 | 错误发现率 | 影响力 |
|---|---|---|---|
| 甘油磷脂代谢 | 0.013 454 | 0.643 01 | 0.244 36 |
| 嘧啶代谢 | 0.015 701 | 0.643 01 | 0.068 09 |
| 氮代谢 | 0.030 620 | 0.643 01 | 0 |
| D-谷氨酰胺和D-谷氨酸代谢 | 0.030 620 | 0.643 01 | 0.500 00 |
| 糖基磷脂酰肌醇(GPI)锚生物合成 | 0.070 168 | 0.745 10 | 0.003 99 |
| 精氨酸生物合成 | 0.070 168 | 0.745 10 | 0.116 75 |
| 丁酸代谢 | 0.075 011 | 0.745 10 | 0 |
| 组氨酸代谢 | 0.079 832 | 0.745 10 | 0 |
| 甘油酯代谢 | 0.079 832 | 0.745 10 | 0.012 46 |
| 泛酸和辅酶A(CoA)的生物合成 | 0.094 163 | 0.755 20 | 0.235 71 |
| 醚脂代谢 | 0.098 896 | 0.755 20 | 0.144 58 |
| 磷脂酰肌醇信号系统 | 0.135 990 | 0.808 66 | 0.001 52 |
| 谷胱甘肽代谢 | 0.135 990 | 0.808 66 | 0.019 66 |
| 丙氨酸、天冬氨酸和谷氨酸代谢 | 0.135 990 | 0.808 66 | 0.197 12 |
| 卟啉和叶绿素代谢 | 0.145 050 | 0.808 66 | 0 |
| 乙醛酸盐和二羧酸盐代谢 | 0.154 030 | 0.808 66 | 0 |
| 精氨酸和脯氨酸代谢 | 0.180 470 | 0.891 75 | 0.086 00 |
| 氨酰基转移核糖核酸生物合成 | 0.222 940 | 1.000 00 | 0 |
| 嘌呤代谢 | 0.290 730 | 1.000 00 | 0 |
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